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Shvoong Home>Science>Biology>The G Protein - Coupled Receptor Subset of the Chicken Genome Summary

The G Protein - Coupled Receptor Subset of the Chicken Genome

Book Summary   by:PLoS     Original Authors: Lagerstrm Malin C; Hellstrm Anders R; Gloriam David E; Larsson Thomas P; Schith Helgi B; Fredriksson Robert
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G proteincoupled receptors (GPCRs) are one of the largest families of proteins, and here we scan the recently sequenced chicken genome for GPCRs. We use a homology-based approach, utilizing comparisons with all human GPCRs, to detect and verify chicken GPCRs from translated genomic alignments and Genscan predictions. We present 557 manually curated sequences for GPCRs from the chicken genome, of which 455 were previously not annotated. More than 60 of the chicken Genscan gene predictions with a human ortholog needed curation, which drastically changed the average percentage identity between the humanchicken orthologous pairs (from 56.3 to 72.9). Of the non-olfactory chicken GPCRs, 79 had a one-to-one orthologous relationship to a human GPCR. The Frizzled, Secretin, and subgroups of the Rhodopsin families have high proportions of orthologous pairs, although the percentage of amino acid identity varies. Other groups show large differences, such as the Adhesion family and GPCRs that bind exogenous ligands. The chicken has only three bitter Taste 2 receptors, and it also lacks an ortholog to human TAS1R2 (one of three GPCRs in the human genome in the Taste 1 receptor family TAS1R), implying that the chicken''s ability and mode of detecting both bitter and sweet taste may differ from the human''s. The chicken genome contains at least 229 olfactory receptors, and the majority of these (218) originate from a chicken-specific expansion. To our knowledge, this dataset of chicken GPCRs is the largest curated dataset from a single gene family from a non-mammalian vertebrate. Both the updated human GPCR dataset, as well the chicken GPCR dataset, are available for download.
Published: June 02, 2006   
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